ssadedin

variant_calling_pipeline

A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.

excelcatgory

A small utility to ease making Excel files with groovy

exome_depth_pipeline

A Bpipe pipeline for easily running ExomeDepth

gatks

A scripting interface to the Genome Analysis Toolkit (GATK)

cn.mops

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cn.mops.html Contributions: http://www.bioinf.jku.at/software/cnmops/cnmops.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cn.mops.

cpipe

The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline

DerbyDebug

Demonstration of a failure with Apache Derby

gatk

GATK Official Release Repository

groovy-hts-sample-info

groovy-stream

A collection of classes to give a fluent builder for Streams (Lazy Groovy Generators)

halo_dsd

The pipeline and read trimming code used for analysing HaloPlex data at MCRI

intervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

kubernetes-elasticsearch-cluster

Elasticsearch cluster on top of Kubernetes made easy.

pandoc

Universal markup converter

planets

sdkman-db-migrations

Database migrations for the sdkman API