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ss3sim

An R package for stock-assessment simulation with Stock Synthesis

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binning

Code for paper investigating the optimal way to bin composition data in stock assessments.

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ss3models

SS3 model setups for use with ss3sim

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ss3sim_nin

Input sample size simulations

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.github

{ss3sim} is an R package that simplifies the steps needed to generate beautiful simulation output from the widely-used Stock Synthesis (SS3), a statistical age-structured stock assessment framework.

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compsampling

Sampling of composition data in an age-structured stock assessment model

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Empirical

Files for creating hake OM in ss3sim and investigating empricial wt-at-age in assessment

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estgrowth

Simulations with ss3sim to guide users when it is best to estimate growth within SS compared to using external estimates.

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natural-mortality

Code for Johnson et al. (2015) -- stock assessment in the face of time-varying natural mortality.

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procdata

Code to investigate interaction of process error and data weighting

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ss3sim_andersonetal

Anderson et al. (2014) - a description of the ss3sim R package

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workshop

A workshop demonstration of the package

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