sreith

salt

Software to automate the management and configuration of any infrastructure or application at scale. Get access to the Salt software package repository here:

diplib

Quantitative Image Analysis in C++, MATLAB and Python

Usiigaci

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

EnvSetup

Choco script for setting up my dev box.

CellTracking

Python and ImageJ scripts designed to track single cells and analyze fluorescence

CTC-FijiPlugins

[OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.

Neural-Network-Classification-of-White-Blood-Cell-Images

Neural Network Classification of White Blood Cell Images is a Capstone Project developed during Data Science Career Track at Springboard (2018)

CellTrackingAndSegmentationPublic

livespin

Detection and tracking of overlapping cell nuclei for large scale mitosis analyses

QuimP

QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

Lineage-Mapper

an overlap based cell-tracker based on Chalfoun et al, Nat. Sci. Rep. 2016

3dcv-students

Exercises for 3D Computer Vision

BoundaryTrack

boundary tracking of binarized cell image sequence

ImageCytometry

Work on the detection, tracking and analysis of cells using image/video processing algorithms

Cell

Culture tracking

EP

Evaluation platform - tool for evaluation of cell segmentation and tracking

TrackPad

TrackPad: semi-automated single cell tracking software

auto_track

Tracking chromosome FROS foci in metaphase budding yeast cells

Simple2DTracking

Simple project to tracking cells in 2D

CellMoveTracking

CellStar1.0.1

CellStar1.0.1 Segmentation & tracking (MATLAB) for research only. http://cellstar-algorithm.org/

Cell_Tracker_MARSS

Cell tracker implemented for MARSS conference paper

CellTrackingEBA

This is my cell tracking package in R, for tracking cells in the limb field of the LPM.

MDL-Cell-Tracker

Simple program to manuall track cell XY location in a series of images

CellTracker

scripts to track nuclei over time and measure mean intensity fluorescence levels

cell-tracking-al

repo for imageJ cell tracking plugin

cell-growth

Tracking cell growth for individual cells from ND2 Video

High-throughput

High-througput analysis for cell migration tracks from Heteromotility features

CellTracking

CellTracker

Cell and nucleus detection and tracking specific for myoblast.