sponge90's repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
compassR
An R library for conducting analyses on COMPASS data.
CytoExploreR
Interactive Cytometry Data Analysis
ggunchull
A ggplot extension for drawing smooth non-convex circles around a set of points.
infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
jjAnno
An annotation package for ggplot plot
luca
Single-cell Lung Cancer Atlas with 1.2M cells
minfi
Devel repository for minfi
msigdf
Molecular Signatures Database (MSigDB) in a data frame
nichenetr
NicheNet: predict active ligand-target links between interacting cells
rCausalMGM
R package for causal MGM algorithms implemented in C++
scDIOR
scDIOR: Single cell data IO softwaRe
SCP
Single Cell Pipeline
scRNAtoolVis
Useful functions to make your scRNA-seq plot more cool!
seurat-wrappers
Community-provided extensions to Seurat
single-cell-papers-with-code
Papers with code for single cell related papers
sscVis
simpler single cell RNAseq data Visualization
STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
v2ray
最好用的 V2Ray 一键安装脚本 & 管理脚本
v2ray-core
A platform for building proxies to bypass network restrictions.