spholmes

F1000_workflow

GraphsTutorial

Tutorial on Graphs and Networks

Workshop2019

Merge of workflow and dada2 new tutorial material for 2019 workshops: ASM, STAMPS

American-Gut

American Gut open-access data and IPython notebooks

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

MSMB_Lab

spholmes.github.io

Homepage documents,talks, videos, papers.

2021-12-02-Stanford

bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

BiocWorkingGroups

Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

Nuclei

Code for Multivariate Analyses of Nuclear Lamin Degradation

R-ecology-lesson

pie

R-ecology-lesson-1

ARCHIVED - Data Analysis and Visualization in R for Ecologists

Workshop

Carpentries

XICOR

R package for generalized correlation