soulfreer

RA_Atlas_CITEseq

RA Synovial Single-cell Multimodal Cell Atlas

infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

rapids_singlecell

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

scanpy-tutorials

Scanpy Tutorials.

HiC_tools

A collection of tools for Hi-C data analysis

PRINT

awesome-chatgpt-prompts-zh

ChatGPT 中文调教指南。各种场景使用指南。学习怎么让它听你的话。

spateo-release

Spatiotemporal modeling of spatial transcriptomics

SpatialBenchmarking

SPACE

single-cell-best-practices

https://www.sc-best-practices.org

OSCA

The package wrapping the book, for deployment via the Bioconductor build system.

velocyto.py

RNA velocity estimation in Python

DesignPattern

Code by IntelliJ IDEA Ultimate with Java

GNNPapers

Must-read papers on graph neural networks (GNN)

seurat

R toolkit for single cell genomics

IPyRSSA

Integrative Python library for RNA Secondary Structure Analysis

icSHAPE-pipe

Pipeline to calculate icSHAPE score in genome with sliding window strategy

zebrafish_structure

Codes for project zebrafish structure data analysis.

3d-deep-learning

3D Deep Learning works

VRmol

VRmol: an Integrative Web-Based Virtual Reality System to Explore Macromolecular Structure

kitti_object_vis

KITTI Object Visualization (Birdview, Volumetric LiDar point cloud )

awesome-cryoem

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

PrismNet

Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure