Sophia Mädler's repositories
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
alphabase
Infrastructure of AlphaX ecosystem
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
venn_labelled
Small python package to plot Venn diagrams where sets of strings are plotted in each segment of the Venn diagram.
spatialdata
An open and interoperable data framework for spatial omics data