sophia-gibson

Sophia Gibson's starred repositories

needLR

Coming Soon!

200

MeOW

Automated Detection and Qualification of Differential Methylation

Language:RGPL-3.01000

pathSTR

Repository with code for the analysis of pathogenic STRs in the 1000G ONT resequencing data

Language:Jupyter NotebookMIT200

abyss

:microscope: Assemble large genomes using short reads

Language:C++NOASSERTION30700

quant_methylation

Language:Shell100

figeno

Tool for plotting sequencing data along genomic coordinates.

Language:PythonGPL-3.023800

methphaser

MethPhaser: methylation-based haplotype phasing of human genomes

Language:PythonMIT3900

sv-analysis

SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel

Language:PythonMIT2200

vamos

VNTR annotation using motif selection

Language:CGPL-2.02800

experience-primer-copilot-sophia-gibson

experience-primer-copilot-sophia-gibson created by GitHub Classroom

Language:JavaScriptMIT100

ModDotPlot

Language:PythonMIT10500

tandem-genotypes

Language:PythonGPL-3.04500

UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing

Language:C++MIT51600

wf-human-variation

Language:NextflowNOASSERTION9200

straglr

Tandem repeat expansion detection or genotyping from long-read alignments

Language:PythonNOASSERTION5700

RShinyDataBrowser

Language:R100

dorado

Oxford Nanopore's Basecaller

Language:C++NOASSERTION46800

napu_wf

WDL workflows for variant calling and assembly using ONT

Language:WDLNOASSERTION2700

modkit

A bioinformatics tool for working with modified bases

Language:RustNOASSERTION12500