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som-shahlab

som-shahlab

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som-shahlab's repositories

ehrshot-benchmark

A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

Language:PythonLicense:Apache-2.0Stargazers:89Issues:11Issues:3

femr

FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

Language:PythonLicense:Apache-2.0Stargazers:86Issues:13Issues:88

medalign

MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

License:MITStargazers:82Issues:22Issues:1

trove

Weakly supervised medical named entity classification

Language:PythonLicense:Apache-2.0Stargazers:68Issues:6Issues:5

Clinfo.AI

This is Clinfo.AI Demo Instruction

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INSPECT_public

INSPECT dataset/benchmark paper, accepted by NeurIPS 2023

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ehr_ml

Code for doing machine learning with various EHRs

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clinical_trial_patient_matching

Repo for Zero-Shot Clinical Trial Patient Matching paper

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aplusml

APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

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survlearners

Metalearners for Survival Data

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motor_tutorial

Tutorial repository for the official MOTOR release

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TrialProbe

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clinical_trial_patient_matching-website

Public facing website for zero-shot CT patient matching paper

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manitest

ManiTest: A lightweight version of the Eleuther AI eval harness built on top of Manifest

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temp_ds_shift_robustness

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ehrshot-website

Public website for EHRSHOT

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manifest

Prompt programming with FMs.

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motor_code_release

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RATE-experiments

Code for reproducing the analyses that appear in "Evaluating Treatment Prioritization Rules via Rank-Weighted Average Treatment Effects"

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constdb-python

ConstDB is a very simple read-only embedded key-value database

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adult_ped_transfer_learning

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CLMBR-contrastive-learning

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dill

serialize all of python

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ehrshot-femr

FEMR compatible with EHRSHOT. Based on FEMR version 0.0.20

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femr-chart-review-tool

Browser-based chart review UI for reviewing patient timelines from FEMR

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inspect-website

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medalign-website

Landing page and website for the MedAlign project

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pad

A repository for building and testing a simple PAD model

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pancreatic_cancer_tutorial

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starr-omop-bq-datasets

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