Metavuo

Metavuo is a platform for managing metabolomics projects. Metavuo is developed by University of Eastern Finland in collaboration with Solita Ltd.

Getting Started

Setup

Clone repo:

 git clone https://github.com/solita/metavuo

Build frontend

 pushd frontend
 npm install
 npm run build
 popd

Run locally

Build and run

 dev_appserver.py dispatch.yaml frontend/app.yaml backend/service/app.yaml

Open and sign in
```
 http://localhost:8080/
```

See more about local development in frontend and backend.

Deploy

Frontend and backend can be deployed separately. Datastore composite indexes are defined in index.yaml

Deploy datastore indexes
```
 gcloud app deploy index.yaml
```
Deploy frontend service
```
 gcloud app deploy frontend/app.yaml
```

Deploy backend service

 gcloud app deploy backend/service/app.yaml

Setup CORS configuration for Storage

 echo '[{"method": ["GET", "PUT"], "origin": ["https://your-project-id.appspot.com"], "responseHeader": ["content-type", "x-goog-meta-uploadedby", "x-goog-meta-description", "x-goog-meta-filetype"]}]' > cors.json
 gsutil cors set cors.json gs://your-project-id.appspot.com/

Versioning

We use SemVer for versioning. For the versions available, see the tags on this repository.

Commit messages

Read and follow: http://chris.beams.io/posts/git-commit/

TL;DR

Summarize changes in around 50 characters or less

More detailed explanatory text, if necessary. Wrap it to about 72
characters or so. In some contexts, the first line is treated as the
subject of the commit and the rest of the text as the body. The
blank line separating the summary from the body is critical (unless
you omit the body entirely); various tools like `log`, `shortlog`
and `rebase` can get confused if you run the two together.

Explain the problem that this commit is solving. Focus on why you
are making this change as opposed to how (the code explains that).
Are there side effects or other unintuitive consequences of this
change? Here's the place to explain them.

Further paragraphs come after blank lines.

 - Bullet points are okay, too

 - Typically a hyphen or asterisk is used for the bullet, preceded
   by a single space, with blank lines in between, but conventions
   vary here

If you use an issue tracker, put references to them at the bottom,
like this:

Resolves: #123
See also: #456, #789

For github issue tracker use Resolves, Fixes or Closes depending on the issue type.

Authors

Kai Kirjavainen - Software Designer
Krista Väänänen - Software Designer
Esko Oramaa - Architect
Teo Ahonen - Project Manager
Jussi Paananen - Product owner
Antton Mattsson - Researcher
Kati Hanhineva - Principal investigator

License

Metavuo is open-source and licensed with the MIT License.

solita / metavuo