Soichi Hayashi's repositories
app-hcp-postfreesurfer
BIDS app for HCP post-FreeSurfer for BrainLife. Outputs include surface topologies and features resampled onto the high (164k) dimensional atlas space as well as myelin mappings. (Please see https://github.com/Washington-University/HCPpipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage#structural-preprocessing for more information on HCP structural pipelines.)
app-3DPialWM_freesurfer
This application converts Freesurfer's pial and white matter surfaces to different file types. It will convert the lh/rh.pial, lh/rh.white, lh/rh.smoothwm, lh/rh.inflated files into your choice of file type (stl, vtk, gii, mgz)
app-benson14-retinotopy
Brainlife.io app for Noah Benson's neuropythy library, retinotopy from T1 anatomy
app-detect-ecg-artifact
A sample brainlife app that uses EEG data (fif)
app-multiAtlasTT
brainlife.io version of maTT
app-shapesignature
This App takes tract masks and convert them to series of numerical values that chracaterizes each masks. The numerical values are generated from the flattened output of 3D convolutional layers of the model trained to classify tract names. Output values could be used as a "shape signature" and compared against other similar shaped tracts.
bids-validator
Validator for the Brain Imaging Data Structure
C-PAC
Configurable Pipeline for the Analysis of Connectomes
centerforopenneuroscience.org
Website materials
characters
characters sample MVC app
CRI_Jetstream_Cluster
Scripts and Ansible Playbooks for building an HPC-style resource in Jetstream
cvmfs-singularity-sync
Scripts to synchronize Singularity images to a CVMFS repository.
dtv-neuro-anat
datatype validator for neuro/anat
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
freesurfer-stats
Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics
hugo-cite
📝 Easily manage your bibliography and in-text citations with Hugo, the popular static-site generator.
hugo-devresume-theme
A free resume/CV template made for software developers.
kdinstaller2
Karst Desktop Intaller
ohbm2020-posters
Centralized registry of Jitsi rooms for OHBM 2020 posters.
PyNets
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
tractogram_filtering
Filtering out of artifactual streamlines from a tractogram with a geometric deep learning model
WiMSE
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
youtube-unsubscriber
Mass unsubscribe from YouTube Channels