soh-i

Soh Ishiguro's starred repositories

gsoap

A tool for visualisation of gene set over-representation analysis (GSOA).

Language:R1000

GOMCL

GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

Language:Python1800

DISCVRSeq

A collection of command line tools for working with sequencing data

Language:HTMLApache-2.04700

trilium

Build your personal knowledge base with Trilium Notes

Language:JavaScriptAGPL-3.02580700

trackplot

trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.

Language:PythonBSD-3-Clause6400

ultraplex

Ultra-fast 5' and 3' demultiplexer

Language:PythonNOASSERTION2100

ggtranscript

Visualizing transcript structure and annotation using ggplot2

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pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Language:CMIT24100

pLannotate

Webserver and command line tool for annotating engineered plasmids

Language:PythonGPL-3.09400

waffle

:maple_leaf: Make waffle (square pie) charts in R

Language:R76700

nyquist-compress-dynamics

An audacity/nyquist plugin for dynamic compression

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correlation

:link: Methods for Correlation Analysis

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ggsignif

Easily add significance brackets to your ggplots

Language:RGPL-3.056300

seqfold

nucleic acid folding

Language:PythonMIT7500

ggdist

Visualizations of distributions and uncertainty

Language:RGPL-3.080500

blogdown

Create Blogs and Websites with R Markdown

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gistpreview.github.io

Gist HTML Preview

Language:HTMLMIT5200

readr

Read flat files (csv, tsv, fwf) into R

Language:RNOASSERTION100000

jupyterlab-desktop

JupyterLab desktop application, based on Electron.

Language:TypeScriptBSD-3-Clause343400

flowCore

Core flow cytometry infrastructure

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openCyto

A package that provides data analysis pipeline for flow cytometry.

Language:RAGPL-3.07400

CytoExploreR

Interactive Cytometry Data Analysis

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FRACTAL

FRACTAL: framework for distributed computing to trace large accurate lineages

Language:PythonGPL-3.02200

FlowKit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

Language:PythonBSD-3-Clause14800

seq

A high-performance, Pythonic language for bioinformatics

Language:C++Apache-2.069600

RNArtist

With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

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ggalluvial

ggplot2 extension for alluvial plots

Language:RGPL-3.048100

xsv

A fast CSV command line toolkit written in Rust.

Language:RustUnlicense1014600

PrettyTables.jl

Print data in formatted tables.

Language:JuliaMIT38900

Dropbox-Uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

Language:ShellGPL-3.0655500