soh-i / Eryngii

Eryngii: Metadata aggregator for GEO/SRA

Eryngii

Eryngii: Metadata aggregator for GEO/SRA

Dependencies

• Spreadsheet::ParseExcel == 0.59
• Spreadsheet::XLSX == 0.13
• Net::FTP.pm: == 2.78
• LWP::Simple == 2.20
• LWP::UserAgent == 6.05
• HTML::TreeBuilder == 5.03
• HTTP::Request::Common == 6.04

Usage

Convert excel file to LTSV.

• For Rodriguez, 2013.

use lib qw{./lib};
use Excel::Parser;
use Generator::FruitFly::Rodriguez;
my $ep = Excel::Parser->new(
                            file => "mmc1.xls",
                            sheet => "Table_S1",
                            format => 'xls'
                           );
$ep->to_csv();
my $gen = Generator::FruitFly::Rodriguez->parse($ep->file());
for my $id ($gen->iter()) {
    print $gen->to_ltsv($id);
}