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soedinglab / MMseqs2-App

MMseqs2 app to run on your workstation or servers

Home Page:https://search.foldseek.com

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Pass --max-seqs through GUI or server API?

mezarque opened this issue · comments

commented

Thanks for building this nice search server! I've been using the FoldSeek search server to search through AlphaFold/Uniprot50 and am noticing that it always returns a maximum of 1000 hits.

Would there be a way to allow for changing the FoldSeek parameters for the webserver, either through the GUI or the API backend?

I noticed that you can set a database's mmseqs2 search parameters using database/ POST but I couldn't find a way to pass search parameters through the ticket/ POST API. It would be super nice to be able to set these kinds of parameters along with the ticket submission.