Snijesh VP's repositories
kmerGenerator
Generate all possible k-mers
NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
gene_lists
List of gene lists for genomic analyses.
face_swap
End-to-end, automatic face swapping pipeline
Patient2Vec
Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record
pdx_exomeseq
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
TopoICSim
TopoICSim: A new semantic similarity measure based on gene ontology
BinReg
Binary Regression Models
ImageEnhancer
Image Enhancer to reduce noises, color image, or expand resolutions
r-tutorial
This book covers the essentials of using R
mergelanes
Merge fastq files split over lanes
smallseq
Pipeline to analyze small RNAs from single-cells
miRCancerdb
A database for microRNA-gene/protein expression correlation in cancer.
snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows.
obo_parser
Parses ontologies in .obo format (such as the Human Phenotype Ontology) and converts them to a .tsv table.
pRRophetic
R package
RNAseq-workflow
A repository for setting up a RNAseq workflow