snashraf

analysis-workflows

MGI's Analysis Workflows and Pipelines managed by the BGA group.

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

Awesome-Bioinformatics-Benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

CleanSV

cloudtools

Scripts for working with Google Cloud Dataproc service

clustergrammer

An interactive heatmap visualization built using D3.js

codehelp

Code tutorials

CovGen

Creates a target specific exome_full192.coverage.txt file required by MutSig

decart_linear_algebra_2019

gene.iobio

An iobio app for examining gene variants

genomepy

Download genomes the easy way.

gggenes

➡️️➡️️⬅️️➡️️ Draw gene maps in ggplot2

gnomad_qc

GREEN-VARAN

Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF

hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

igv-classifier

In-depth-NGS-Data-Analysis-Course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

INS_assembly

InterVar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

lemon-tree

Module Network Inference software

MetabolomicsTools

OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

pVACtools

quant-genetics-webinars

Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series

sllobs-biostats

snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

stix

Structural Variant Index

toolshed

python stuff I use

VariantBam

Filtering and profiling of next-generational sequencing data using region-specific rules