smoe

amdgpu-utils

A set of utilities for monitoring and customizing GPU performance

bedtools2

bedtools - the swiss army knife for genome arithmetic

bowtie

An ultrafast memory-efficient short read aligner

cgdsr

R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)

content

Experimental repo of bio.tools content for augmentation with other sources of tool information

cyvcf2

cython + htslib == fast VCF and BCF processing

docker

dropbead

gclib

GCLib - Genomic C++ library of reusable code for bioinformatics projects

gplots

Various R Programming Tools for Plotting Data

gtools

Functions to assist in R programming

hts-nim-tools

useful command-line tools written to show-case hts-nim

interproscan

kineticsTools

Tools for detecting DNA modifications from single molecule, real-time sequencing data

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nanomath

A few simple math function for other Oxford Nanopore processing scripts

nanosv

SV caller for nanopore data

nim-regex

Pure Nim regex engine. Guarantees linear time matching

PeerTube

ActivityPub-federated video streaming platform using P2P directly in your web browser

pigx_scrnaseq

Pipeline for analysis of Dropseq single cell data

plasmidID

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pychopper

A tool to identify, orient, trim and rescue full length cDNA reads

quicktree

Fast implementation of the neighbour-joining phylogenetic inference method

readerwriterqueue

A fast single-producer, single-consumer lock-free queue for C++

ROCm

ROCm - Open Source Platform for HPC and Ultrascale GPU Computing

SKESA

SKESA assembler

Sniffles

Structural variation caller using third generation sequencing

spades

SPAdes Genome Assembler

yanosim

Nanopore DRS read simulator