Sarah Goggin's repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
analysis-nda
Collection of scripts to analyze ABCD release data
auto-annotation-md
Auto-annotations from Mouse brain development
bdshack19
Coordinating the 2019 Biomedical Data Science Hackathon at UVA
benchmarking-gnns
Repository for benchmarking graph neural networks
CerebellumDev
Code for processing data
crisporWebsite
All source code of the crispor.org website
DCC
This repository contains the source code and data for reproducing results of Deep Continuous Clustering paper
harmony
Scalable integration of single cell RNAseq data for batch correction and meta analysis
Multiscale_PHATE
Creating multi-resolution embeddings and clusters from high dimensional data
pCreode
An algorithm for mapping cell state transitions.
SINCERA
An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
spiatuva.github.io
A Github Pages template for nonprofits seeking a starter website. Includes online donations and newsletter signup.
zellkonverter
Conversion between scRNA-seq objects
ZunderPipelineFunctions
Helper functions for Zunder lab pipeline