smaegol / blastr

R wrapper for NCBI's blast

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blastr - Using NCBI BLAST with R

The Basic Local Alignment Search Tool (BLAST) is a suite of programs that are used to find regions of local similarity between biological sequences and to calculate the statistical significance of the matches.

The blastr package provides R wrappers around the most common BLAST functions, allows both local and remote queries using standard DNAStringSet or AAStringSet representations of sequences, and provides parsers for BLAST XML and tabular output.

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R wrapper for NCBI's blast

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