smacneil1

Lung_Cancer_Project_KRAS

This repository contains all the codes to make ASSIGN predictions on lung cancer cell lines from CCLE

PANCAN24_Analysis

Predicting GFRN Pathway Activation Across 24 Types of Cancer

applied_genomics_TA

Scripts for teaching Applied Genomics at the University of Utah

DataScienceBootCamp

Lesson plans for the 2016 summer data science boot camp at the University of Utah.

genomicsAPI

Contains the scripts for developing an API for GSOA, ASSIGN, and other Bild Lab tools.

GFRN_signatures

GSOA-Shiny

An interactive web application for using GSOA. https://smacneil.shinyapps.io/GSOA/

Lee_LSD_Biomarker

assign_examples

Example scripts for running the ASSIGN package on RNA-seq data

bild-lab-shared-tools

Shared tools for Andrea Bild's lab

Dissertation_Chapter2_Multi-Pathway_Modeling

Code for Multi-Pathway Modeling Manuscript(Dissertation Chapter 2)

django

The Web framework for perfectionists with deadlines.

docker-shiny

Dockerfile to be use to build image for docker container with Shiny

docsify

🃏 A magical documentation site generator.

dplyr

Plyr specialised for data frames: faster & with remote datastores

gsoa-user-guide

https://smacneil1.github.io/gsoa-user-guide/

gsoa_docker

Docker for GSOA

gsoa_user_guide.github.io

PD1_Resistance_Signature

PI3K_Signature_Validation

Validating the PI3K RNA-sequencing signature

python-data-science-primer

A primer for data science tools in Python

R-GSOA

A R package that performs multi-omic gene set enrichment analysis

rickshaw

JavaScript toolkit for creating interactive real-time graphs

rmarkdown

Dynamic Documents for R

shiny

shiny-examples

shiny_ui

Wed User Interface For GSOA

Teaching_Josh_R

Teaching Materials

U45_Computational

whitelist

Scripts to create a whitelist for genes outside coding regions