slimsuite

treeval

Pipelines for the production of Treeval data

depthkopy

Read-depth based copy number estimation

chromsyn

Chromosome-level synteny plotting using orthologous regions

taxolotl

Genome assembly taxonomy summary and assessment tool.

peregrine-2021

depthsizer

Read-depth based genome size prediction

numtfinder

NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool

snapper

Genome-wide SNP Mapper and Genome Comparison Tool

gapspanner

Genome assembly gap long read support and reassembly tool

depthcharge

Genome assembly quality control and misassembly repair

pafscaff

PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.

saaga

SAAGA: Summarise, Annotate & Assess Genome Annotations

diploidocus

Diploid genome assembly analysis tools

synbad

Synteny-based scaffolding adjustment

buscomp

BUSCOMP: BUSCO Compiler and Comparison tool

SLiMEnrich

SLiMEnrich Shiny App for prediction of domain-motif interactions

DBG2OLC

A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

SLiMSuite

Open source short linear motif discovery and sequence analysis

SLiMscape

Test repo for SLiMScape: a Cytoscape plugin for discovery and analysis of Short Linear Motifs