Victor Montal's repositories
abagen
A toolbox for working with Allen Human Brain Atlas microarray expression data
AdaptivePELE
AdaptivePELE is a Python package aimed at enhancing the sampling of molecular simulations
Analysis-of-Network-Centrality-Measures-in-Python
Within this work, several experiments in Oldham et al. paper that is conducted in MATLAB, is coded up using Jupyter Notebook.
awesome-network-analysis
A curated list of awesome network analysis resources.
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
brainsmash
Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity
BROCCOLI
BROCCOLI: Software for Fast fMRI Analysis on Many-Core CPUs and GPUs
ComBatHarmonization
Harmonization with ComBat
DRLComplex
Deep reinforcement learning for protein complex modeling
DW-POSSUM
Simulate realistic diffusion-weighted MR data
fury
FURY - Free Unified Rendering in pYthon.
RegSeg
RegSeg is a simultaneous segmentation and registration method that uses active contours without edges (ACWE) extracted from structural images. The contours evolve through a free-form deformation field supported by the B-spline basis to optimally map the contours onto the data in the target space.
kalliope
Kalliope is a modular always-on voice controlled personal assistant designed for home automation.
matplotlib_surface_plotting
matplotlib mesh surface plotter
nxviz
Visualization Package for NetworkX
PyMOL-PUB
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
pySuStaIn
Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.
pyvenn
Python module for plotting Venn diagrams of 2..6 sets
slowest-particle-simulator-on-earth
A half-serious project to generate **very** serious brain explosions.
snfpy
Similarity network fusion in Python
spin-test
This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of human brain structure and function," Alexander-Bloch et al., NeuroImage, 2018. See Wiki for a selection of other papers that use this code.
vennt
Dynamic Venn diagrams for differential gene expression
yolo2-pytorch
YOLOv2 in PyTorch