Shane Hogle's repositories
phosphonates
Supporting data and code for: "Phosphonate production by marine microbes: exploring new sources and potential function"
code-LO-letters-2016
Supporting data and code for: "Copiotrophic marine bacteria are associated with strong iron-binding ligand production during phytoplankton blooms"
hambiRNAseq
Supporting data and code for: "Localized coevolution between microbial predator and prey alters community-wide gene expression and ecosystem function"
cyano-sidero-ocean
Supporting data and code for: "Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean"
hambiConsumerCompetition
Supporting data and code for: "Effects of phenotypic variation on consumer coexistence and prey community structure"
Longhurst-Province-Finder
Determines Longhurst Province for a given Lat/Long coordinate
mg2geotraces
R code to match GEOTRACES IDP samples to some metagenome samples
milla_4sp_assembly
Python code for OT2 to setup plates for Milla's assembly experiment
OT2_plate_spotting
Protocol for Opentrons OT-2 to do high throughput plate spotting for colony counts
singularity-conda
A Singularity recipe that properly initialize a conda environment
slhogle.github.io
Shane Hogle's Personal Site
tara_oceans_metadata
Wrangling metadata from Tara Oceans to a useable format
UTU_microbial_genomics
:computer: :floppy_disk: Some bioinformatics tutorials for the 2018 University of Turku Microbial Genomics Course
virtual_env_defs
Singularity definition files for building various software to run on HPC systems
zenodo-upload
upload big files to Zenodo using cURL, jq and bash