sleepepi / slice

A clinical research interface geared at collecting robust and consistent data by providing a strong framework for designing data dictionaries and collection forms.

Slice

A clinical research interface geared at collecting robust and consistent data by providing a strong framework for designing data dictionaries and collection forms. Slice also provides exports of the data and the data dictionaries created as well as providing a simple reporting interface. Using Rails 6.1+ and Ruby 2.6+.

Installation

Prerequisites Install Guide: Instructions for installing prerequisites like Ruby, Git, JavaScript compiler, etc.

Once you have the prerequisites in place, you can proceed to install bundler which will handle most of the remaining dependencies.

gem install bundler

This readme assumes the following installation directory: /var/www/slice

cd /var/www

git clone https://github.com/sleepepi/slice.git

cd slice

bundle install

Install default configuration files for database connection, email server connection, server url, and application name.

ruby lib/initial_setup.rb

rails db:migrate RAILS_ENV=production

rails assets:precompile RAILS_ENV=production

Run Rails Server (or use Apache or nginx)

rails s -p80

Open a browser and go to: http://localhost

All done!

Setting up Daily Digest Emails, Password Reminders, and Refreshing Sitemap

Edit Cron Jobs sudo crontab -e to run the task lib/tasks/daily_digest.rake

SHELL=/bin/bash
0 1 * * * source /etc/profile.d/rvm.sh && cd /var/www/slice && rvm 2.6.4 && rails daily_digest RAILS_ENV=production
0 1 * * * source /etc/profile.d/rvm.sh && cd /var/www/slice && rvm 2.6.4 && rails passwords:expire RAILS_ENV=production
0 2 * * * source /etc/profile.d/rvm.sh && cd /var/www/slice && rvm 2.6.4 && rails sitemap:refresh RAILS_ENV=production
0 3 * * * source /etc/profile.d/rvm.sh && cd /var/www/slice && rvm 2.6.4 && rails exports:expire RAILS_ENV=production
*/5 * * * * source /etc/profile.d/rvm.sh && cd /var/www/slice && rvm 2.6.4 && rails checks:run_job RAILS_ENV=production

Contributing to Slice

• Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet
• Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it
• Fork the project
• Start a feature/bugfix branch
• Commit and push until you are happy with your contribution
• Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
• Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.

License

Slice is released under the MIT License.