ENNET algorithm
This is an implementation of ENNET algorithm for Gene Regulatory Network inference from mRNA expression data, in form of a R package. See http://www.biomedcentral.com/1752-0509/7/106 for more information.
Requirements:
- R environment, the package was implemented and tested using R version 2.13.1.
- "foreach", "plyr" R packages installed. In order to install the packages go to R console, and type:
>install.packages("foreach")
>install.packages("plyr")
- g++ compiler and standard libraries.
Installation:
- Download and unpack the source code to the download folder.
- Install the package by invoking the following command in the installation folder, e.g. a folder containing README.md file, from command line:
$R CMD build ennet && R CMD INSTALL ennet
Usage:
- Once the R package is installed, please refer to the reference manual, e.g. inside R console type:
>library(ennet)
>?ennet
LICENSE
Copyright (C) 2013 Janusz Slawek
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program, see LICENSE.