slarson

openbel-framework

An open platform for capturing, integrating, storing, and sharing biological knowledge in and across organizations.

PyloricNetwork

Implementation of the pyloric network of the lobster somatogastric ganglion system of Prinz, Marder, et al.

neurokernel

Neurokernel Project

antonie

Antonie is an integrated, robust, reliable and fast processor of DNA reads

bionet

Artificial biological neural network

openworm_docs

Documentation for OpenWorm

open-worm-analysis-toolbox

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

urdme

Stochastic reaction-diffusion simulation on unstructured meshes.

OpenWorm

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

antiquity

Antiquity - A versioned graph extension.

org.geppetto.simulator.jlems

jLEMS based simulator for Geppetto

org.geppetto.simulation

Generic simulation bundle for Geppetto

org.geppetto.solver.sph

PCI SPH Solver bundle for Geppetto

org.openworm.simulationengine.frontend

Frontend Web Application Bundle Project

org.geppetto.frontend

Geppetto Java frontend bundle

org.geppetto.samplesimulation

Sample neuronal simulation/frontend for the simulation engine / proof of concept

wormbrowser

The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

virgo-maven-plugin