Spencer Trinh's repositories
nextflow-ubuntu
basic ubuntu container that installs nextflow and conda
fractal-react-app
react app to explore the beauty of fractals
rpi-k8s-react
simple react+fastapi app that uses 16x2 lcd screen display
nvim-lua-config
neovim config using Lua
chemical-smiles-viewer
fastapi backend to visualise Chemical smiles extension introduced by Chemaxon
efficacy-visualiser-R
R shiny app to view efficacy studies
rshiny-svg-js
rshiny app that uses js to allow mouse hover on svg element
dm-invitro-file-viewer
fastapi react app that mimics DM form to view files associated with experiments and allows user to download. more low level control of how to view and when using SQL in the backend
dotmatics-docker
docker container for dotmatics platform
nlpPDF_app
Flask Web-app using NLP libraries (NLTK, spaCy) to parse PDF files and output for users to interpret important keywords from journal articles
jenkins-arm64
arm64 architecture base image from balena to install jenkins on raspberry pi devices
bdb-Rscripts
rscripts that were written during bdb employment
ubuntu-work-image
Ubuntu docker container image with nvim, and bare essential tools
airflow-test
airflow basic setup for BashOperator & DockerOperator
bdb-R-python-nbks
Misc data analysis juypyter notebook files for reference
ML_linkerPredictor
clone of amine activation linker predictor
bioinformatics-dnatoolkit-tutorial
Bioninformatics DNA toolkit built from scratch following tutorial videos online
molar-hackathon
Use of Molar chemistry database API to create a GUI interface in an attempt to help scientists save experimental data easier. The public dataset was borrowed from Nanostring that includes GeoMx Digital Spatial Profiler for tissue analysis. Part of a hackathon hosted by Acceleration Consortium.
VoV-generate-worklist
python script using argparse to generate worklists for VoV (Venus on Vantage)
romiq-docker-nossh
no ssh app
fastapi-ppt-embed-figs
fastapi backend app to embed matplotlib figures into powerpoint slides
acr-build-helloworld-node
Sample Node.js application for use in demonstrating Azure Container Registry Build.
pg_flaskapi
postgresql flask api
dot_files
backup of dot files
nlpPDFNN_app
clone of original version of the NLP app however, revamped using neural network to classify keywords in body of text