Beast code in Giters

Sergey Koren's repositories

triobinningScripts

Scripts to reproduce TrioBinning manuscript

Language:Java17 5 4

ArrowGrid

Language:ShellNOASSERTION8 3 9

QuiverGrid

Quiver wrapper for SGE

Language:ShellNOASSERTION8 10

bacValidation

BAC-based validation of assemblies

Language:CNOASSERTION601

NanoGrid

Nanopolish wrapper for SGE

Language:ShellNOASSERTION4 30

PilonGrid

Language:Java2 1 1

verkkohic

scripts for combining verkko with hi-c data

Language:Python100

Winnowmap

Long read / genome alignment software

Language:CNOASSERTION100

BIBM2013

Paper for BIBM2013.

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bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT000

helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Language:PythonMIT000

hifioverlapper

Language:C++000

Mandalorion

Analysis Pipeline to analyze Nanopore RNAseq data

Language:Python010

MBG

Language:C++MIT000

NucFreq

Language:Python000

SALSA

SALSA: A tool to scaffold long read assemblies with Hi-C data

Language:PythonMIT000

segDupPlots

Language:R010

Simulome

Simulome, genome and mutant variant simulator.

Language:PythonMIT010