skoplev

pan-cancer-protein-bimodality

Source code for analyzing protein bimodal expression from collection of pan-cancer cell lines, identifying epithelial-mesenchymal states and transcriptomic signature.

starnet

Source code for cross-tissue co-expression analysis of the STARNET multitissue gene expression data from cardiovascular disease patients.

bdmergeR

cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

d-chain

Global Bayesian drug response curve for systematic combinatorial drug synergy screen. Based on cell viability data.

emmapt

hpc-cibersort

Lightweight wrapper for running CIBERSORT via LSF.

lincs-direct-access-tools

Angular module that visualizes the tools and databases of the LINCS project.

lincs-milestones

Milestones table view for LINCS data found at http://amp.pharm.mssm.edu/milestones

lincs-particle-logo

Pixel-based real time animation of LINCS-DCIC logo.

lincs-project-org

Web site for the LINCS project.

p100mosaic

rseq

A collection of programs for analyzing RNA-seq data.

starnet-site

Back-end and front-end source code for STARNET website, hosted on starnet.mssm.edu

tutor-heatmap

Tutorial for making heatmaps in R with the heatmap.3 package.