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Seth Kasowitz's starred repositories

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

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parsnip

A tidy unified interface to models

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cheap-proteins

Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https://www.biorxiv.org/content/10.1101/2024.08.06.606920v1

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ggmagnify

Create a magnified inset of part of a ggplot object

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Transformers-in-Action

This is the corresponding code for the book Transformers in Action

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pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

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ggdist

Visualizations of distributions and uncertainty

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peloton-stats

Analysis of personal Peloton stats using the Peloton API

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dplyr

dplyr: A grammar of data manipulation

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hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

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janitor

simple tools for data cleaning in R

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miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

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medaka

Sequence correction provided by ONT Research

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Circuitseq

Nanopore Plasmid Sequencing

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dplyover

Create columns by applying functions to vectors and/or columns in 'dplyr'.

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geomtextpath

Create curved text paths in ggplot2

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dockyard

Tools for building and working with docker containers in R

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zoomerjoin

Superlatively-fast fuzzy-joins in R

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Addgene_dashboard

A dashboard to display plasmid request data from Addgene

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dtwclust

R Package for Time Series Clustering Along with Optimizations for DTW

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DrWhy

DrWhy is the collection of tools for eXplainable AI (XAI). It's based on shared principles and simple grammar for exploration, explanation and visualisation of predictive models.

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This Repository is here for retro-compatibility, and is auto-updated. The main repository has been moved to https://github.com/matrix-profile-foundation/tsmp. R Functions implementing UCR Matrix Profile Algorithm (http://www.cs.ucr.edu/~eamonn/MatrixProfile.html).

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