Sehrish Kanwal's repositories
GATK-CaseStudy
GATK Variant Calling Workflow using Galaxy, CWL and Cpipe
10June2022-collab-example
Carpentries exercise
2018-06-16_Introduction-to-R-workshop
Workshop material
amgit
Modified version of Pro Git
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcbio-validation-checker
Compare validation outputs from bcbio against existing truth sets
bioconda-recipes
Conda recipes for the bioconda channel.
blair-walden-project
The Blair Walden Project: in 1845 Henry David Thoreau went to live in the woods... a year later his journal was found.
calc
A simple python calculator
gvl-melbgenomics-deploy
Scripts for creating flavours of Cpipe and LOVD for the GVL
MegaQC
Web application to collect and visualise data across multiple MultiQC runs.
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
NPM-sample-qc
https://c-big.github.io/NPM-sample-qc
Play
The expert in anything was once a beginner!!!
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
umccrise
Bcbio results umccrization
vcf-venn
A tool to compare variants contained within multiple vcf format files, to determine common and unique variants to each file. To write these variants to a new file also in vcf format.
wgs-sample-qc
Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results
workflows
Community maintained workflows & tools (with examples)