Scott Teresi's repositories
TE_Density
Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
Vaccinium_Pangenome_TE_Analysis
Publication: https://doi.org/10.1093/hr/uhad202
Blueberry_Network_Rewiring
Code and documentation for the "Blueberry Galling Project". Part of my second thesis chapter
Blueberry_RNA_Seq_Expression_Analysis
Perform an RNA-Seq alignment, quantify gene expression, and determine differentially expressed genes. Part of my second thesis chapter
CFRA_Syntelog_TE_Differences
TE differences of syntelogs in wild strawberry
Fish_TE_Differences
Publication: https://www.nature.com/articles/s41467-023-43740-y
Fragaria_TE_Annotations
TE annotations for various Fragaria genomes using EDTA
Grape_RNA_Seq_Expression_Analysis
By Scott Teresi, generate gene expression values and differential gene expression data for grape
sjteresi.github.io
Personal Website
teaching_materials
Repository to store templates, guides, and presentations
TE_Density_Old
Transposon Density for H4 and Camarosa
W85_TE_Annotation
TE Annotation code for W85 (diploid blueberry) genome.