sjdv1982

seamless

Seamless is a framework to set up reproducible computations (and visualizations) that respond to changes in cells. Cells contain the input data as well as the source code of the computations, and all cells can be edited interactively.

attract

ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)

biohackathon-covid

alphafold

Open source code for AlphaFold.

assembly

attract-jax

bayesian_inference_fm

biopython

Official git repository for Biopython (originally converted from CVS)

capri-targets

Automatic CAPRI target identification

cloudless

Workload manager and web front end for Seamless

ColabFold

Making Protein folding accessible to all via Google Colab!

consero

Assembly docking poses of fragments in PDB formats into full all-atoms models

crocodile

dask-jobqueue

Deploy Dask on job schedulers like PBS, SLURM, and SGE

dock_stacking_dna-rna

docking_py

Docking_py is a python library allowing a simplified use of the Smina, vina, qvina2 and qvinaw docking software. Docking_py can be easily automatize and scripted.

gpuATTRACT_2.0

hashserver

ASGI file server that serves Seamless buffers

histograms

IPOPS-web

nademo

Nucleid acid demo using Seamless

nefertiti

Near-native Ensemble Fragments: Enumeration, Rotation, Translation, In a short TIme

orca-grid

ProtNAff

Multi-Purpose Structural Database of Nucleic-Acid/Protein Complexes

rprod

seamless-binder-demo

A collection of Seamless demo notebooks, to be run via mybinder.org

seamless-recipes

seamless-tools

This repo contains tools related to the deployment of Seamless

silk

Library for schema validation, object-oriented API wrappers (like ECMAS prototypes), and mixed JSON/binary serialization.

ssRNATTRACT