Shaun Jackman's repositories
abyss-activity
ABySS learning activity
linkage-map-slides
Scaffolding genome sequence assemblies using a linkage map
marmot-mitochondrion
Yellow-bellied marmot
picea-sitchensis-mitochondrion-legacy
:evergreen_tree: Mitochondrial genome of Sitka spruce (Picea sitchensis)
pygraphviz
Python interface to Graphviz graph drawing package
tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
assembler-components
Components of genome sequence assembly tools
bioconda-recipes
Conda recipes for the bioconda channel.
docker-imgs
A repository to store all the docker images used in flowcraft
flowcraft
A Nextflow pipeline assembler for genomics :whale::package:
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
homebrew-num
:beer::1234: Homebrew formulae for numerical methods
homebrew-tap
Personal formulae for the Homebrew package manager
homebrew-xorg
:heavy_multiplication_x: X.Org implementation of the X Window System
lariat
Linked-Read Alignment Tool
modular-assembly-hs18
Mix and match modular genome assembler components
nycflights13
An R data package containing all out-bound flights from NYC in 2013 + useful metdata
orca
:whale: Genomics Research Container Architecture
patchelf.rb
ELF patcher
psitchensismt-slides
Mitochondrial Genome of Sitka Spruce (Picea sitchensis)
quick-cliques
Quickly compute all maximal cliques of a graph
tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
tigmint-recomb-slides
Tigmint: Correcting Misassemblies Using Linked Reads From Large Molecules
Unicycler
hybrid assembly pipeline for bacterial genomes