sivyerge

ColorStackByTimeAndProject

ImageJ macros to color stacks by time point and create a video where the projection builds up frame by frame.

yishuzh.github.io

ZstackDepthColorCode

Z-stack Depth Colorcode ImageJ FIJI plugin

lazypredict

Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning

shap

A game theoretic approach to explain the output of any machine learning model.

pyfiberamp

Fiber laser and amplifier modeling in Python

ConvNetDraw

Draw multi-layer neural network in your browser

lime

Lime: Explaining the predictions of any machine learning classifier

CS542-FinalProject

Boston University 2022 SUMMER CS542 Final Project

lime-experiments

Code for all experiments.

ame

🤖🤖 Attentive Mixtures of Experts (AMEs) are neural network models that learn to output both accurate predictions and estimates of feature importance for individual samples.

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

CNN-SVM-HybridModel

Boston University SPRG2022 EC503 - Learning from Data - Final Project

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

denoising-fluorescence

CVPR 2019: Fluorescence Microscopy Denoising (FMD) dataset

obsidian_vault_template_for_researcher

This is an vault template for researchers using obsidian.

Image-Registration

Image registration algorithm. Includes SIFT, SAR-SIFT,PSO-SIFT.

Recursive_Refinement_Network

voxelmorph

Unsupervised Learning for Image Registration

pytorch-CycleGAN-and-pix2pix

Image-to-Image Translation in PyTorch

whittaker-eilers-smoother

Whittaker-Eilers smoother (from "A perfect smoother") in Python-numpy-scipy

Chemical_image_analysis

Python-100-Days

Python - 100天从新手到大师

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

AI-Expert-Roadmap

Roadmap to becoming an Artificial Intelligence Expert in 2022

nndl.github.io

《神经网络与深度学习》 邱锡鹏著 Neural Network and Deep Learning

twoPhotonVessels

Analysis for 2-PM vasculature

SID

Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)

CaImAn-MATLAB

Complete Matlab pipeline for large scale calcium imaging data analysis

awesome-MATLAB

A curated list of awesome MATLAB toolboxes, applications, software and resources.