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Sirjan Sapkota (sirjansapkota)

sirjansapkota

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Company:Bayer Crop Science

Location:Clemson, SC

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KresovichLab

Sirjan Sapkota's starred repositories

AlphaSimR

R package for breeding program simulations

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useful-sed

Useful sed scripts & patterns.

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WheatGbyE

Scripts for GxE analysis and plotting of nursery

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KernelMethods

Core of functions to build gaussian kernel, arc-cosine and GBLUP with additive, dominance effects and environmental information

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predhy

Genomic Prediction of Hybrid Performance

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statements

Successful Job Applications and Grants

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reproducibleResearch

Biol 4800: a course on reproducible research using R and some other fun bits, taught by Tad Dallas at Louisiana State University.

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maizeG2P

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Glimma

Glimma R package

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qgg

Statistical tools for Quantitative Genetic Analyses

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Heritability

Heritability in plant breeding - R and SAS code examples

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Field-Book

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impute4diallel

SNP imputation for diallel hybrids from parental SNPs

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JWAS.jl

Julia for Whole-genome Analysis Software

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workshops

Repository for BioContainers Hackthons and Workshops

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statannot

add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot

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singularity-r

Singularity recipes for images containing R

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DLpipeline

Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

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drone-pipeline

Generalizing the TERRA REF pipelines for processing data from UAV's

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Burchardlab_Tutorials

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brapi

An R package to use the Breeding API (BrAPI) for accessing plant breeding data.

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resume.github.com

Resumes generated using the GitHub informations

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cv

Geoff Boeing's academic CV in LaTeX

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RSSS

A comparative study of RNA-seq analysis strategies

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ZeaBigData.github.io

web site of zea big data

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pedigreeTools

R functions related to pedigrees

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data-science-machine-learning-ai-resources

A curated set of resources for data science, machine learning, artificial intelligence (AI), data and text analytics, data visualization, big data, and more.

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Deep_Learning_Papers

Library of Deep Learning Papers

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Logistic_Regression_Python

Efficient Implementation of Logistic Regression from Scratch in Python

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limix

Linear mixed model for genomic analyses.

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