sirjansapkota / GP_Sorghumhybrids

Mixed model analysis of heterosis in a line x tester data, heritability estimation, variance component analysis and Genomic Prediction of hybrid performance and general combining abilities

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GP_Sorghumhybrids

Mixed model analysis of phenotypes and heterosis in a line x tester hybrids data, heritability estimation, variance component analysis and genomic best linear unbiased prediction (GBLUP).

data

Phenotypic data for hybrids is in "HDP_Heterosis_ByBlock.csv", contains hybrid values (Hyb_v), mid parent heterosi (MPH), etc.

GRM_phased_thinned.RData has the genomic relationship matrices (GRM) calculated from the marker data, G = inbred additive GRM, A = hybrid additive GRM, and D = hybrid dominance matrix.

results

Output folder has RData files that has details from model fit and variance components and BLUPs/GBLUPs. Main results are in the parent directory of this subdirectory.

scripts

Scripts used to run model fit, plotting, and qsub files for submission of jobs to the cluster.

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Mixed model analysis of heterosis in a line x tester data, heritability estimation, variance component analysis and Genomic Prediction of hybrid performance and general combining abilities


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