singhbhavya

bio_utils

General utilities, functions, and to-dos for single-cell, spatial transcriptomic, and other bioinformatics analyses. Some functions and utilities may be geared towards usage within Mount Sinai's Minerva HPC infrastructure.

gtex_sc_bulk_comparison

Comparison of GTEx bulk and single-cell retrotranscriptomic data, generated from Telescope and Stellarscope respectively.

hematological_malignancies_te_analysis

tea-biscuit-retro

TEA-BISCUIT Workshop Day 2: Bulk Retrotranscriptomic Analysis

Telescope_Bootcamp

A Nixon Lab bootcamp to familiarize lab members with bioinformatics, Snakelike workflows, GitHub, Anaconda, and general analysis and quantification of transposable elements in RNA-seq data.