singha53-zz

geomxCloud

GeoMx Cloud: Cloud compute and interactive dashboards of Spatial Omics Data.

QuickAnnotator

An open-source digital pathology based rapid image annotation tool

ST_benchmark

chemprop

Message Passing Neural Networks for Molecule Property Prediction

PrecisionHealthVirtualEnvironment

This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.

CRANE

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

compute-canada-hpc

Beginner tutorials and help for using Compute Canada's High Performance Computer. Learn to setup and run a Jupyter Notebook!

cocoa_paper

uvadlc_notebooks

Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2023

GenomeAnalysisModule

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

StudyGroup

This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.

KPNN

Knowledge-primed neural networks

DeepCompression

This is my own implementation and understanding of the original paper paper

SubTab

The official implementation of the paper, "SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning"

shap

A game theoretic approach to explain the output of any machine learning model.

mimic-cxr

Code, documentation, and discussion around the MIMIC-CXR database

selene

a framework for training sequence-level deep learning networks

Multicore-TSNE

Parallel t-SNE implementation with Python and Torch wrappers.

diffpool

cellxgene

An interactive explorer for single-cell transcriptomics data

cellxgene-documentation

Documentation for the cellxgene product

Recover

Exploring the space of drug combinations to discover synergistic drugs using Active Learning

Reservoir

The Data Lake for the Recover coalition

scimap

Spatial Single-Cell Analysis Toolkit

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

graph_nets

Build Graph Nets in Tensorflow

minerva-story

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

BDKANN

Biological domain knowledge based artificial neural network

draw_convnet