Beast code in Giters

Simon martin's repositories

General tools for genomic analyses.

Language:Python312 10 114

Topology weighting by iterative sampling of sub-trees

Language:PythonGPL-3.064 3 45

Tutorials on evolutionary genomics

Genome alignment and synteny plots

Language:RGPL-3.024 2 2

D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum

Language:RGPL-3.015 1 5

Analyses for Kim and De-Kayne et al. "Stepwise evolution of a butterfly supergene via duplication and inversion"

Language:R100

Scripts and commands from Dierickx et al. 'Neo-sex chromosomes and demography shape genetic diversity in the Critically Endangered Raso lark'

Language:Jupyter Notebook100

A simple individual-based forward simulator

Language:R000

Simulate genome assemblies with variants (single-nucleotide and structural)

Language:Python000