Simon Graham's repositories
hovernet_inference
HoVer-Net inference code for simultaneous nuclear segmentation and classification
segmentation_zoo
Library of segmentation networks
cpath_preprocess
Repository for the hands on data wrangling session at 'PathLAKE Data Science for Computational Pathology'
StainTools
Tools for tissue image stain normalisation and augmentation in Python 3 [!important]
e2cnn
E(2)-Equivariant CNNs Library for Pytorch
harmonicConvolutions
Deep Translation and Rotation Equivariance
Masterclass-Hackathon
A deep learning model of mutation prediction using a form of a transfer learning from H&E images. It is provided as a baseline to the Hackathons participants in PathLAKE masterclass, Royal College of Pathologists, London 2020.
post_processing
Post Processing
pytorch-retinanet
Pytorch implementation of RetinaNet object detection.
scikit-learn
scikit-learn: machine learning in Python
simongraham.github.io
Simon Graham
stats_measures_classification
Scripts to calculate statistical measurements for classification
stats_measures_segmentation
Scripts to calculate statistical measurements for segmentation
tensorflow
An Open Source Machine Learning Framework for Everyone
tensorpack
A Neural Net Training Interface on TensorFlow, with focus on speed + flexibility