Silvina del Carmen's repositories
alphafold
Open source code for AlphaFold.
python-ecology-lesson
Data Analysis and Visualization in Python for Ecologists
free-programming-books
:books: Freely available programming books
SQANTI2
Private repo for Liz's modified SQANTI
jax-jupyter
Jackson Labs hands-on workshop material for using Jupyter Notebooks on CloudOS
spladder
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
pancanatlas_code_public
Public repository containing research code for the TCGA PanCanAtlas Splicing project
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
rageseq
RAGE-seq scripts
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
ISOP
Isoform-level expression patterns in single-cell RNA-sequencing data
intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
matplotlib-venn
Area-weighted venn-diagrams for Python/matplotlib
ASpli
Analysis of alternative splicing using RNAseq
ipsa-full
Integrative Pipeline for Splicing Analyses (IPSA)
Vennerable
Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.