sigven

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Institute for Cancer Research, Oslo University Hospital / Department of Informatics, University of Oslo

Oslo, Norway

https://sigven.github.io

Sigve Nakken's starred repositories

obs-studio

OBS Studio - Free and open source software for live streaming and screen recording

Language:CGPL-2.059811 1442 4083

python-patterns

A collection of design patterns/idioms in Python

Language:Python40357 1643 88

data-science-interviews

Data science interview questions and answers

Language:HTMLCC-BY-4.08851 226 16

awesome-workflow-engines

A curated list of awesome open source workflow engines

Apache-2.06303 229 29

quarto-cli

Open-source scientific and technical publishing system built on Pandoc.

Language:JavaScriptNOASSERTION3872 31 4995

st

simple statistics from the command line

Language:PerlMIT923 23 22

modelsummary

Beautiful and customizable model summaries in R.

Language:HTMLNOASSERTION912 10 691

awesome-rshiny

An awesome R-shiny list!

Language:RCC0-1.0797 55 17

report

:scroll: :tada: Automated reporting of objects in R

Language:RNOASSERTION694 18 279

hugo-theme-introduction

Minimal, single page, smooth-scrolling theme for Hugo static site generator.

Language:HTMLApache-2.0668 8 193

popgen-notes

Population genetics notes

Language:PostScriptMIT640 50 8

DRKG

A knowledge graph and a set of tools for drug repurposing

Language:Jupyter NotebookApache-2.0579 26 24

ggcoverage

Visualize and annotate genomic coverage with ggplot2

Language:RNOASSERTION227 5 33

import

An Import Mechanism For R

Language:RNOASSERTION222 8 62

biomartr

Genomic Data Retrieval with R

Language:R215 14 89

arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

Language:PythonGPL-3.0116 11 113

lgr

A fully featured logging framework for R

Language:HTMLNOASSERTION81 5 62

imola

Easy CSS layouts (grid and Flexbox) for R/shiny dashboards

Language:RNOASSERTION75 3 1

ssubmit

Submit slurm sbatch jobs without a script

Language:RustUnlicense65 2 4

hugo-remote

GitHub Action to build and deploy a Hugo site to a remote repository. Deploy from a private repo to a public one!

Language:ShellMIT65 5 8

python-human-regex

More understandable alternatives for Python regular expressions

Language:PythonUnlicense58 20

speckle

R package for analysing single cell data

Language:RGPL-3.048 1 8

pathview

pathway based data integration and visualization

Language:R37 4 29

fishHook

R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

Language:R27 11 16

CINSignatureQuantification

Quantifying copy number signatures from absolute copy number profiles

Language:RNOASSERTION23 6 12

data-carpentry-rnaseq

Language:HTML21 3 3

envir

Simple utilities to manage R environments

Language:RGPL-3.015 2 2

realtest

When Expectations Meet Reality: Realistic Unit Testing in R

Language:HTMLNOASSERTION11 30

PAnno

PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.

Language:PythonMPL-2.09 1 4

QuartoReport

Example government report

Language:R8 2 9