Scripts for processing NGS reads.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
rmnrich.py: remove reads with 'N' % greater than a threshold.
rmlowq.py: remove reads with more than a fraction_threshold% of low quality bases (i. e., bases that have a score less than a quality_threshold).
rmerge.py: merge forward reads from one FASTQ file with reverse reads from the other FASTQ file into one FASTQ file.