slp's repositories
anndata
Annotated data.
ArchR_2020
Publication Page for ArchR Manuscript 2020
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
BioSequences.jl
Biological sequences for the julia language
bwa-mem2
The next version of bwa-mem
catch
A package for designing compact and comprehensive capture probe sets.
dr2s
Dual Redundant Reference Sequencing
dragonn
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
factoextra
Extract and Visualize the Results of Multivariate Data Analyses
fucking-algorithm
刷算法全靠套路，认准 labuladong 就够了！English version supported! Crack LeetCode, not only how, but also why.
Giotto_site
Website for the Giotto spatial toolbox
googletest
Googletest - Google Testing and Mocking Framework
latexify_py
Generates LaTeX math description from Python functions.
MIND
Using Bulk Gene Expression to Estimate Sample/Subject-Level Cell-Type-Specific Gene Expression via Deconvolution
MutationTimeR
An R package to time somatic mutations
OnJava8
《On Java 8》中文版
OPERA-MS
OPERA-MS - Hybrid Metagenomic Assembler
plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
PyG2Plot
🎨 Python3 binding for `@AntV/G2Plot` Plotting Library .
SeeCiTe
Package to assess the quality of and visualize array CNVs for trios
seurat-wrappers
Community-provided extensions to Seurat
slideseq-tools
Tools for analyzing Slide-seq data
tidyverse
Easily install and load packages from the tidyverse
variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow