Shabana Hoosein's starred repositories
q2-moshpit
MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
Antimicrobial-drug-use-effect-on-microbiome-and-resistome-of-beef-feedlots
This repository contains all of the code required to replicate the analysis in the manuscript "METAGENOMIC INVESTIGATION OF THE EFFECTS OF ANTIMICROBIAL DRUG USE PRACTICES ON THE MICROBIOME AND RESISTOME OF BEEF FEEDLOT CATTLE"
metagenome_assembly_pipeline
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
SqueezeMeta
A complete pipeline for metagenomic analysis
Shotgun-Metagenomics-Analysis
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more