shobhitagrawal1

scPRINT

Single Cell Pretrained Regulatory network INference from Transcripts

Trace

Trace, the New AutoDiff for AI Systems and LLM Agents

Hierarchical_Bayesian_Cell_Counts

LatentDAG

sccomp

Testing differences in cell type proportions from single-cell data.

claude-engineer

Claude Engineer is an interactive command-line interface (CLI) that leverages the power of Anthropic's Claude-3.5-Sonnet model to assist with software development tasks. This tool combines the capabilities of a large language model with practical file system operations and web search functionality.

DiskVectorIndex

positron

Positron, a next-generation data science IDE

fullRankMatrix

It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space of the original columns. This results in a full rank matrix that can be used as a design matrix in linear models.

NSForest

A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

outlines

Structured Text Generation

Mellon

Non-parametric density inference for single-cell analysis.

LaVague

Large Action Model framework to develop AI Web Agents

sae

Sparse autoencoders

uv

An extremely fast Python package installer and resolver, written in Rust.

tinygrad

You like pytorch? You like micrograd? You love tinygrad! ❤️

thread

AI-powered Jupyter Notebook — use local AI to generate and edit code cells, automatically fix errors, and chat with your data

textgrad

TextGrad: Automatic ''Differentiation'' via Text -- using large language models to backpropagate textual gradients.

iSpatial

infer whole genome spatial transcriptome by integrating single cell RNAseq and spatial transcriptome

msn_subclustering

MoA

Together Mixture-Of-Agents (MoA) – 65.1% on AlpacaEval with OSS models

QDiffusion.jl

Leveraging the full dimensionality of single-cell transcriptomics (among other things!)

HCNetlas

Human cell-type-specific network atlas (HCNetlas) and network-based single-cell RNA-seq data analysis

Perplexica

Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI

jax-diffusion-transformer

Implementation of Diffusion Transformer (DiT) in JAX

file-organizer

sparrow

Data processing with ML and LLM

scFseClusterV1.0

scFseCluster: a Feature selection enhanced clustering for single cell RNA-seq data

Liu_Supekar_SA_2024

AlphaFastPPi

Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening