shlokanegi / callmods_5hmC

Generates high-confidence 5hmC mod calls using modkit, other stats and plots

Callmods 5hmC workflow

This workflow generates high-confidence 5hmC mod calls from an aligned modbam using modkit, and other stats and plots.

Test locally

## Run with miniwdl
miniwdl run --as-me -i inputs.json workflow.wdl
## Run with cromwell
java -jar cromwell run workflow.wdl -i inputs.json

Test with Toil

toil-wdl-runner workflow.wdl --inputs inputs.json