shishenyxx / DeepMosaic

DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.

https://www.nature.com/articles/s41587-022-01559-w

shishenyxx/DeepMosaic Issues

NAs in the predictions
Updated 2 months ago1
too many PASS for 30X WGS
Closed 2 months ago1
Docker image?
Updated 2 months ago1
Effect of adapters on the final calling
Updated 4 months ago3
Condition for "extra_mosaic_filters"
Closed 4 months ago2
Using DeepMosaic for diploid plants
Closed 7 months ago6
Too many mutect2 variants
Closed 7 months ago10
How to run DeepMosaic with nanopore WGS data?
Closed 9 months ago3
Indel predictions
Closed 9 months ago1
homopolymer and dinucluotide filter
Closed 10 months ago1
Large number of output files
Closed a year ago3
Very high number of mosaic predictions
Closed a year ago8
Multi-threaded support
Closed a year ago2
Run errors
Closed a year ago2
Error in downloading new 1.1.1 singularity container
Closed a year ago2
deepmosaic-draw: error: unrecognized arguments: -db gnomad_genome
Closed a year ago7
CRAM input
Updated a year ago1
different gnomad databases?
Closed a year ago1
torch
Closed a year ago1
Errors at multiprocessing and matplotlib
Closed a year ago3
A little issue in canvasPainter.py
Closed a year ago1
How DeepMosaic use population information in training
Closed a year ago1
Questions about sample.vcf in step1
Closed a year ago6
high maf and score3 simultaneously?
Closed a year ago2
About SimData
Closed 2 years ago5
speed up step 1?
Closed a year ago2
If input VCFs are splitted by chromosomes, should input BAM files also be splitted by chromosomes too?
Closed a year ago1
Recommendations for calling candidate variants
Closed 4 years ago8
mac?
Closed 2 years ago2
DeepMosaic performance at 30x depth?
Closed 2 years ago4
running DeepMosaic with hg38
Closed 2 years ago3
How does DeepMosaic perform on PCR-amplified WES data?
Closed 2 years ago7