shinthor's repositories
aider-fork
aider is AI pair programming in your terminal
alzheimers_parkinsons
Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
AutoAWQ
AutoAWQ implements the AWQ algorithm for 4-bit quantization with a 2x speedup during inference. Documentation:
autogen
A programming framework for agentic AI. Discord: https://aka.ms/autogen-dc. Roadmap: https://aka.ms/autogen-roadmap
AutoGPT-fork
AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.
chainlit
Build Conversational AI in minutes ⚡️
continue-fork
⏩ Open-source VS Code and JetBrains extensions that enable you to easily create your own modular AI software development system
custom_websearch_agent
Custom Websearch Agent Built with Local Models, vLLM, and OpenAI
DeepExplain
A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
graphtools
Tools for building and manipulating graphs in Python. Forked to make up to date with sklearn versions 1.0.2 and onward which removed the sklearn.utils.graph.graph_shortest_path and replace it with scipy.sparse.csgraph.shortest_path as sklearn recommends
Intro-to-ChIPseq
Intro to ChIPseq using HPC
functionary
Chat language model that can use tools and interpret the results
jidoujisho
A full-featured immersion language learning suite for mobile.
langchain-fork
🦜🔗 Build context-aware reasoning applications
llama.cpp
LLM inference in C/C++
lm-format-enforcer
Enforce the output format (JSON Schema, Regex etc) of a language model
Loyal-Elephie
This project combines the power of a neat Next.js web UI and a mighty Python backend, leveraging the latest advancements in LLM and RAG to deliver a seamless and meaningful chatting experience! OpenAI compatible API is supported.
openai-python
The official Python library for the OpenAI API
outlines-fork
Structured Text Generation
pytorchTutorial
PyTorch Tutorials from my YouTube channel
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
simpletransformers
Transformers for Classification, NER, QA, Language Modelling, Language Generation, T5, Multi-Modal, and Conversational AI
TISSUE
TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty measures for gene expression predictions in single-cell spatial transcriptomics datasets and utilizing them in downstream analyses
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2